Publications

2026

• Reanna K Panagides, Erin Q Rogers, Amy Killelea, Tim Horn, Jessica Keim-Malpass, Stephen D Turner, Amber Steen, Kathleen A McManus. New Residence-Based Formula for Ryan White HIV/AIDS Program Funding: Projected Jurisdictional Impacts, 2025–2030. Open Forum Infectious Diseases, 2026. DOI URL
• Jessica T. Davis, Gursharn Kaur, Annabella Hines, Michal Ben-Nun, Srinivasan Venkatramanan, Logan Brooks, Sarabeth Mathis, Marco Ajelli, …, V. P. Nagraj, …, Stephen D. Turner, …, Rebecca K. Borchering. Multi-season evaluation and analysis of categorical trend forecasts of influenza hospital admissions in the United States. medRxiv, 2026. DOI URL
• Agnieszka Swiatecka-Urban, Nilay Mitash, Alexander F. Koeppel, Stephen D. Turner. Two Genomes, one Outcome: Stratifying Donor and Recipient Polygenic Risk Score to Improve Kidney Allograft Longevity. Transplantation, 2026. DOI
• Stephen Turner. AI Biosecurity Benchmarks and Real-World Risk. Social Science Research Network, 2026. DOI URL
• Christopher Douglas Robert Wyatt, Fernando Duarte Frutos, Stephen D. Turner, Alexandra Cerqueira De Araujo, Usman Rashid, Victoria Begley, Seirian Sumner. nf-core/genomeqc: a best-practice pipeline for comparing genome and assembly quality. bioRxiv, 2026. DOI URL
• V. P. Nagraj, Stephen D. Turner, Neal Magee. Survey and Evaluation of Applied Containerization Practices in Bioinformatics. bioRxiv, 2026. DOI URL
• V. P. Nagraj, Karsten H. Siller, Thomas Stewart, Neal Magee, Stephen D. Turner. Ten quick tips to SNIFF out sustainable and secure scientific software. PLOS Computational Biology, 2026. DOI URL
• Stephen D. Turner. AI can design and run thousands of lab experiments without human hands. Humanity isn’t ready for the new risks this brings to biology. The Conversation, 2026. DOI URL
• Stephen Turner, Agnieszka Swiatecka-Urban, Arjun Krishnan. Rubrics, Not Vibes: Structured AI Integration as Quality Control for Peer Review. Social Science Research Network, 2026. DOI URL
• Cock van Oosterhout, Megan A. Supple, Hernán E. Morales, Thomas Birley, Vikash Tatayah, Carl G. Jones, Harriet L. Whitford, Simon Tollington, …, Stephen D. Turner. Reply to ‘Genome engineering for conservation might be a game changer but only with the incorporation of Indigenous voices’. Nature Reviews Biodiversity, 2026. DOI URL

2025

• Stephen D. Turner, Anna Keyte, Andrew Pask, Beth Shapiro. De-extinction technology and its application to conservation. The Journal of Heredity, 2025. DOI
• Cock van Oosterhout, Megan A. Supple, Hernán E. Morales, Thomas Birley, Vikash Tatayah, Carl G. Jones, Harriet L. Whitford, Simon Tollington, …, Stephen D. Turner. Genome engineering in biodiversity conservation and restoration. Nature Reviews Biodiversity, 2025. DOI URL
• V. P. Nagraj, Amy E. Benefield, Desiree Williams, Stephen D. Turner. PLANES: Plausibility analysis of epidemiological signals. PLOS ONE, 2025. DOI URL

2024

• Stephen D. Turner. biorecap: an R package for summarizing bioRxiv preprints with a local LLM. arXiv, 2024. DOI URL
• Sarabeth M. Mathis, Alexander E. Webber, Tomás M. León, Erin L. Murray, Monica Sun, Lauren A. White, Logan C. Brooks, Alden Green, …, V. P. Nagraj, Stephen D. Turner, …, Rebecca K. Borchering. Evaluation of FluSight influenza forecasting in the 2021–22 and 2022–23 seasons with a new target laboratory-confirmed influenza hospitalizations. Nature Communications, 2024. DOI URL

2023

• Stephen D. Turner, Kathleen Morrill, Gregory Gedman, Alexander J. Titus. tfboot: Bootstrapping and statistical analysis for transcription factor binding site-disrupting variants in gene sets. bioRxiv, 2023. DOI URL
• David A. Russell, Erin M. Gorden, Michelle A. Peck, Christina M. Neal, Mary C. Heaton, Jessica L. Bouchet, Alexander F. Koeppel, Elayna Ciuzio, Stephen D. Turner, Carmen R. Reedy. Developmental Validation of the Illumina Infinium Assay Using the Global Screening Array on the iScan System for Use in Forensic Laboratories. Forensic Genomics, 2023. DOI URL
• V. P. Nagraj, Stephen D. Turner. pracpac: Practical R Packaging with Docker. arXiv, 2023. DOI URL
• VP Nagraj, Desiree Williams, Stephen D. Turner. Evaluating Performance of Near-Term Influenza Forecasters Across Consecutive Seasons. medRxiv, 2023. DOI URL

2022

• Alexander F. Koeppel, William J. Goodrum, Morgan M. Steffen, Louie L. Wurch, Stephen D. Turner. Environmental DNA sequencing dataset from Lake Erie algal blooms using Oxford Nanopore MinION. Data in Brief, 2022. DOI URL
• Michelle A. Peck, Alexander F. Koeppel, Erin M. Gorden, Jessica L. Bouchet, Mary C. Heaton, David A. Russell, Carmen R. Reedy, Christina M. Neal, Stephen D. Turner. Internal Validation of the ForenSeq Kintelligence Kit for Application to Forensic Genetic Genealogy. Forensic Genomics, 2022. DOI URL
• Van Q. Truong, Jakob A. Woerner, Tess A. Cherlin, Yuki Bradford, Anastasia M. Lucas, Chelsea C. Okeh, Manu K. Shivakumar, Daniel H. Hui, …, Stephen D. Turner, …, Shefali S. Verma. Quality Control Procedures for Genome‐Wide Association Studies. Current Protocols, 2022. DOI URL
• Stephen D. Turner. KGP: An R Package with Metadata from the 1000 Genomes Project. arXiv, 2022. DOI URL
• V.P. Nagraj, Matthew Scholz, Shakeel Jessa, Jianye Ge, August E. Woerner, Meng Huang, Bruce Budowle, Stephen D. Turner. vcferr: Development, validation, and application of a single nucleotide polymorphism genotyping error simulation framework. F1000Research, 2022. DOI URL
• Estee Y. Cramer, Evan L. Ray, Velma K. Lopez, Johannes Bracher, Andrea Brennen, Alvaro J. Castro Rivadeneira, Aaron Gerding, Tilmann Gneiting, …, V. P. Nagraj, …, Stephen D. Turner, …, Nicholas G. Reich. Evaluation of individual and ensemble probabilistic forecasts of COVID-19 mortality in the United States. Proceedings of the National Academy of Sciences, 2022. DOI URL
• David A Russell, Erin M Gorden, Michelle A Peck, Christina M Neal, Mary C Heaton, Jessica Bouchet, Alexander F Koeppel, Elayna Ciuzio, Stephen D Turner, Carmen R Reedy. Developmental Validation of the Illumina Infinium Assay using the Global Screening Array (GSA) on the iScan System for use in Forensic Laboratories. bioRxiv, 2022. DOI URL
• Amanda J. G. Dickinson, Stephen D. Turner, Stacey Wahl, Allyson E. Kennedy, Brent H. Wyatt, Deborah A. Howton. E-liquids and vanillin flavoring disrupts retinoic acid signaling and causes craniofacial defects in Xenopus embryos. Developmental Biology, 2022. DOI URL
• Alexander F. Koeppel, Will Goodrum, Morgan Steffen, Louie Wurch, Stephen D. Turner. Environmental DNA sequencing data from algal blooms in Lake Erie using Oxford Nanopore MinION. bioRxiv, 2022. DOI URL
• Stephen D Turner, Chris Hulme-Lowe, V.P. Nagraj. Forecasting Influenza-Like Illness (ILI) during the COVID-19 Pandemic. medRxiv, 2022. DOI URL
• Stephen D. Turner, Michelle A. Peck. k2v: A Containerized Workflow for Creating VCF Files from Kintelligence Targeted Sequencing Data. bioRxiv, 2022. DOI URL
• V. P. Nagraj, Chris Hulme-Lowe, Shakeel Jessa, Stephen D. Turner. Automated Infectious Disease Forecasting: Use-cases and Practical Considerations for Pipeline Implementation. Proceedings of the Epidemiology meets Data Mining and Knowledge Discovery Workshop, 2022. DOI URL
• Stephen D. Turner, V.P. Nagraj, Matthew Scholz, Shakeel Jessa, Carlos Acevedo, Jianye Ge, August E. Woerner, Bruce Budowle. Evaluating the Impact of Dropout and Genotyping Error on SNP-Based Kinship Analysis With Forensic Samples. Frontiers in Genetics, 2022. URL
• V P Nagraj, Matthew Scholz, Shakeel Jessa, Jianye Ge, Meng Huang, August E Woerner, Dixie Peters, Bruce Budowle, Michael D Coble, Stephen D Turner. Relationship Inference with Low-Coverage Whole Genome Sequencing on Forensic Samples. Forensic Genomics, 2022. DOI
• Stephen D. Turner, V. P. Nagraj, Matthew Scholz, Shakeel Jessa, Carlos Acevedo, Jianye Ge, August E. Woerner, Bruce Budowle. skater: an R package for SNP-based kinship analysis, testing, and evaluation. F1000Research, 2022. DOI

2021

• Marit M. Melssen, Karlyn E. Pollack, Max O. Meneveau, Mark E. Smolkin, Joel Pinczewski, Alexander F. Koeppel, Stephen D. Turner, Katia Sol-Church, …, Craig L. Slingluff. Characterization and comparison of innate and adaptive immune responses at vaccine sites in melanoma vaccine clinical trials. Cancer Immunology, Immunotherapy, 2021. DOI
• VP Nagraj, Chris Hulme-Lowe, Stephanie L. Guertin, Stephen D. Turner. FOCUS: Forecasting COVID-19 in the United States. medRxiv, 2021. DOI URL
• William S. Bush, Stephen D. Turner. Complex Genetic Interactions/Data Mining/Dimensionality Reduction. Genetic Analysis of Complex Diseases, 2021. DOI URL
• Stephen D. Turner, William S. Bush. Data Management. Genetic Analysis of Complex Diseases, 2021. DOI URL

2020

• Tianyanxin Sun, Tania L. Gonzalez, Nan Deng, Rosemarie DiPentino, Ekaterina L. Clark, Bora Lee, Jie Tang, Yizhou Wang, …, Stephen D. Turner, …, Margareta D. Pisarska. Sexually Dimorphic Crosstalk at the Maternal-Fetal Interface. The Journal of Clinical Endocrinology & Metabolism, 2020. DOI URL
• Alexander Goncearenco, Brenna A. LaBarre, Hanna M. Petrykowska, Weerachai Jaratlerdsiri, M. S. Riana Bornman, Stephen D. Turner, Vanessa M. Hayes, Laura Elnitski. DNA methylation profiles unique to Kalahari KhoeSan individuals. Epigenetics, 2020. DOI URL
• Denise K. Grosenbaugh, Suchitra Joshi, Mark P. Fitzgerald, Kevin S. Lee, Pravin K. Wagley, Alexander F. Koeppel, Stephen D. Turner, Michael J. McConnell, Howard P. Goodkin. A deletion in Eml1 leads to bilateral subcortical heterotopia in the tish rat. Neurobiology of Disease, 2020. DOI URL
• Stacey L. Burgess, Jhansi L. Leslie, Jashim Uddin, David N. Oakland, Carol Gilchrist, G. Brett Moreau, Koji Watanabe, Mahmoud Saleh, …, Stephen D. Turner, …, William A. Petri. Gut microbiome communication with bone marrow regulates susceptibility to amebiasis. The Journal of Clinical Investigation, 2020. DOI URL
• Sophie R. Liebergall, Jerry Angdisen, Shun Hang Chan, YingJu Chang, Timothy F. Osborne, Alexander F. Koeppel, Stephen D. Turner, Ira G. Schulman. Inflammation Triggers Liver X Receptor-Dependent Lipogenesis. Molecular and Cellular Biology, 2020. DOI
• Desmond I. Bannon, Wenjun Bao, Stephen D. Turner, Wilfred C. McCain, William Dennis, Russ Wolfinger, Ed Perkins, Roger Abounader. Gene expression in mouse muscle over time after nickel pellet implantation. Metallomics, 2020. DOI URL

2019

• Darwin J. Operario, Suporn Pholwat, Alex F. Koeppel, Alyson Prorock, Yongde Bao, Katia Sol-Church, Michele Scheurenbrand, Melinda Poulter, Stephen Turner, …, Eric R. Houpt. Mycobacterium avium Complex Diversity within Lung Disease, as Revealed by Whole-Genome Sequencing. American Journal of Respiratory and Critical Care Medicine, 2019. DOI
• Alyse L. Frisbee, Mahmoud M. Saleh, Mary K. Young, Jhansi L. Leslie, Morgan E. Simpson, Mayuresh M. Abhyankar, Carrie A. Cowardin, Jennie Z. Ma, …, Stephen D. Turner, …, William A. Petri. IL-33 drives group 2 innate lymphoid cell-mediated protection during Clostridium difficile infection. Nature Communications, 2019. DOI URL
• Bora Lee, Alex F. Koeppel, Erica T. Wang, Tania L. Gonzalez, Tianyanxin Sun, Lindsay Kroener, Yayu Lin, Nikhil V. Joshi, …, Stephen D. Turner, …, Margareta D. Pisarska. Differential gene expression during placentation in pregnancies conceived with different fertility treatments compared with spontaneous pregnancies. Fertility and Sterility, 2019. DOI URL
• James V. McCann, Lin Xiao, Dae Joong Kim, Omar F. Khan, Piotr S. Kowalski, Daniel G. Anderson, Chad V. Pecot, Salma H. Azam, …, Stephen D. Turner, …, Andrew C. Dudley. Endothelial miR-30c suppresses tumor growth via inhibition of TGF-β–induced Serpine1. The Journal of Clinical Investigation, 2019. DOI URL
• Nontokozo D. Matume, Denis M. Tebit, Laurie R. Gray, Stephen D. Turner, David Rekosh, Pascal O. Bessong, Marie-Louise Hammarskjöld. Characterization of APOBEC3 variation in a population of HIV-1 infected individuals in northern South Africa. BMC Medical Genetics, 2019. DOI
• Stella J. Berendam, Alexander F. Koeppel, Nicole R. Godfrey, Sherin J. Rouhani, Amber N. Woods, Anthony B. Rodriguez, J. David Peske, Kara L. Cummings, Stephen D. Turner, Victor H. Engelhard. Comparative Transcriptomic Analysis Identifies a Range of Immunologically Related Functional Elaborations of Lymph Node Associated Lymphatic and Blood Endothelial Cells. Frontiers in Immunology, 2019. DOI URL

2018

• Ryan D. Makin, Ivana Apicella, Yosuke Nagasaka, Hiroki Kaneko, Stephen D. Turner, Nagaraj Kerur, Jayakrishna Ambati, Bradley D. Gelfand. RF/6A Chorioretinal Cells Do Not Display Key Endothelial Phenotypes. Investigative Ophthalmology & Visual Science, 2018. DOI URL
• Tania L. Gonzalez, Tianyanxin Sun, Alexander F. Koeppel, Bora Lee, Erica T. Wang, Charles R. Farber, Stephen S. Rich, Lauren W. Sundheimer, …, Stephen D. Turner, …, Margareta D. Pisarska. Sex differences in the late first trimester human placenta transcriptome. Biology of Sex Differences, 2018. DOI URL
• Stacey E. Wahl, Brent H. Wyatt, Stephen D. Turner, Amanda J. G. Dickinson. Transcriptome analysis of Xenopus orofacial tissues deficient in retinoic acid receptor function. BMC Genomics, 2018. DOI
• Bingfang Xu, Stephen D. Turner, Barry T. Hinton. Alteration of transporter activities in the epididymides of infertile initial segment-specific Pten knockout mice. Biology of Reproduction, 2018. DOI URL
• Yi Hao, Glen A. Bjerke, Karolina Pietrzak, Tiffany A. Melhuish, Yu Han, Stephen D. Turner, Henry F. Frierson, David Wotton. TGFβ signaling limits lineage plasticity in prostate cancer. PLOS Genetics, 2018. DOI URL
• Stephen D. Turner. qqman: an R package for visualizing GWAS results using Q-Q and manhattan plots. Journal of Open Source Software, 2018. DOI URL

2017

• Yingtang Shi, Ruth L. Stornetta, Daniel S. Stornetta, Suna Onengut-Gumuscu, Emily A. Farber, Stephen D. Turner, Patrice G. Guyenet, Douglas A. Bayliss. Neuromedin B Expression Defines the Mouse Retrotrapezoid Nucleus. Journal of Neuroscience, 2017. DOI URL
• Darwin J. Operario, Alexander F. Koeppel, Stephen D. Turner, Yongde Bao, Suporn Pholwat, Sayera Banu, Suporn Foongladda, Stellah Mpagama, …, Eric R. Houpt. Prevalence and extent of heteroresistance by next generation sequencing of multidrug-resistant tuberculosis. PLOS ONE, 2017. DOI URL
• Ying Zhang, Nichola Cruickshanks, Fang Yuan, Baomin Wang, Mary Pahuski, Julia Wulfkuhle, Isela Gallagher, Alexander F Koeppel, …, Stephen Turner, …, Roger Abounader. Targetable T-type calcium channels drive glioblastoma. Cancer Research, 2017. DOI URL
• D. L. Brautigan, R. Li, E. Kubicka, S. D. Turner, J. S. Garcia, M. L. Weintraut, E. A. Wong. Lysolecithin as feed additive enhances collagen expression and villus length in the jejunum of broiler chickens. Poultry Science, 2017. DOI URL

2016

• Christophe J. Langouet-Astrie, Annamarie L. Meinsen, Emily R. Grunwald, Stephen D. Turner, Raymond A. Enke. RNA sequencing analysis of the developing chicken retina. Scientific Data, 2016. DOI URL
• Anoush E. Anderson, Taniguchi, Yi Hao, Tiffany A. Melhuish, Anant Shah, Stephen D. Turner, Ann E. Sutherland, David Wotton. Tgif1 and Tgif2 repress expression of the RabGAP, Evi5l. Molecular and Cellular Biology, 2016. DOI URL
• Nathalie S. Houssin, Navaneetha Krishnan Bharathan, Stephen D. Turner, Amanda J.G. G Dickinson. The role of JNK during buccopharyngeal membrane perforation, the last step of embryonic mouth formation. Developmental Dynamics, 2016. DOI URL
• Anthony J. Filiano, Yang Xu, Nicholas J. Tustison, Rachel L. Marsh, Wendy Baker, Igor Smirnov, Christopher C. Overall, Sachin P. Gadani, Stephen D. Turner, …, Jonathan Kipnis. Unexpected role of interferon-γ in regulating neuronal connectivity and social behaviour. Nature, 2016. DOI URL
• Su-fern Tan, Xin Liu, Todd E Fox, Brian M Barth, Arati Sharma, D Stephen, Andy Awwad, Alden Dewey, …, David J Feith. Acid ceramidase is upregulated in AML and represents a novel therapeutic target. Oncotarget, 2016. DOI
• O A Cherepanova, D Gomez, L S Shankman, P Swiatlowska, J Williams, O F Sarmento, G F Alencar, D L Hess, …, S D Turner, …, G K Owens. Activation of the pluripotency factor OCT4 in smooth muscle cells is atheroprotective. Nature Medicine, 2016. DOI URL
• Sheryl E Arambula, Scott M Belcher, Antonio Planchart, Stephen D Turner, Heather B Patisaul. Impact of Low Dose Oral Exposure to Bisphenol A (BPA) on the Neonatal Rat Hypothalamic and Hippocampal Transcriptome: A CLARITY-BPA Consortium Study.. Endocrinology, 2016. DOI URL
• Matthew J. Barrett, Alexander F. Koeppel, Joseph L. Flanigan, Stephen D. Turner, Bradford B. Worrall. Investigation of Genetic Variants Associated with Alzheimer Disease in Parkinson Disease Cognition. Journal of Parkinson’s Disease, 2016. DOI
• Claudia Z. Han, Ignacio J. Juncadella, Jason M. Kinchen, Monica W. Buckley, Alexander L. Klibanov, Kelly Dryden, Suna Onengut-Gumuscu, Uta Erdbrügger, Stephen D. Turner, …, Kodi S. Ravichandran. Macrophages redirect phagocytosis by non-professional phagocytes and influence inflammation. Nature, 2016. DOI URL

2015

• Carlos E Barbery, Frank A Celigoj, Stephen D Turner, Ryan P Smith, Parviz K Kavoussi, Brian H Annex, Jeffrey J Lysiak. Alterations in microRNA expression in a murine model of diet-induced vasculogenic erectile dysfunction.. The journal of sexual medicine, 2015. DOI URL
• Amy J. Mathers, Nicole Stoesser, Anna E. Sheppard, Louise Pankhurst, Adam Giess, Anthony J. Yeh, Xavier Didelot, Stephen D. Turner, …, Costi D. Sifri. Klebsiella pneumoniae Carbapenemase (KPC)-Producing K. pneumoniae at a Single Institution: Insights into Endemicity from Whole-Genome Sequencing. Antimicrobial Agents and Chemotherapy, 2015. DOI URL
• James C. Cronk, Noël C. Derecki, Emily Ji, Yang Xu, Aaron E. Lampano, Igor Smirnov, Wendy Baker, Geoffrey T. Norris, …, Stephen D. Turner, …, Jonathan Kipnis. Methyl-CpG Binding Protein 2 Regulates Microglia and Macrophage Gene Expression in Response to Inflammatory Stimuli. Immunity, 2015. DOI URL
• C.a. Hurney, S.K. Babcock, D.R. Shook, T.M. Pelletier, S.D. Turner, J. Maturo, S. Cogbill, M.C. Snow, K. Kinch. Normal table of embryonic development in the four-toed salamander, Hemidactylium scutatum. Mechanisms of Development, 2015. DOI URL
• Carol a. Gilchrist, Stephen D. Turner, Margaret F. Riley, William a. Petri, Erik L. Hewlett. Whole-Genome Sequencing in Outbreak Analysis. Clinical Microbiology Reviews, 2015. DOI URL
• Rasia Li, Stephen D. Turner, David L. Brautigan. Xanthophylls lutein and zeaxanthin modify gene expression and induce synthesis of hyaluronan in keratinocyte model of human skin. Biochemistry and Biophysics Reports, 2015. DOI URL

2014

• S. D. Turner. qqman: an R package for visualizing GWAS results using Q-Q and manhattan plots. bioRxiv, 2014. DOI URL
• Woo-Jin Song, Prosenjit Mondal, Andrew Wolfe, Laura C. Alonso, Rachel Stamateris, Benny W.T. Ong, Owen C. Lim, Kil S. Yang, …, Stephen D. Turner, Mehboob A. Hussain. Glucagon Regulates Hepatic Kisspeptin to Impair Insulin Secretion. Cell Metabolism, 2014. DOI URL
• Brian C. Belyea, Fang Xu, Ellen S. Pentz, Silvia Medrano, Minghong Li, Yan Hu, Stephen Turner, Robin Legallo, …, R. Ariel Gomez. Identification of renin progenitors in the mouse bone marrow that give rise to B-cell leukaemia. Nature Communications, 2014. DOI URL
• Samuel S. Minot, Stephen D. Turner, Krista L. Ternus, Dana R. Kadavy. SIANN: Strain Identification by Alignment to Near Neighbors. bioRxiv, 2014. DOI URL
• E Kaitlynn Allen, Alex F Koeppel, J Owen Hendley, Stephen D Turner, Birgit Winther, Michèle M Sale. Characterization of the nasopharyngeal microbiota in health and during rhinovirus challenge.. Microbiome, 2014. DOI URL
• Marylyn D. Ritchie, Shefali S. Verma, Molly A. Hall, Robert J. Goodloe, Richard L. Berg, Dave S. Carrell, Christopher S. Carlson, Lin Chen, …, Stephen D. Turner, Catherine A. McCarty. Electronic medical records and genomics (eMERGE) network exploration in cataract: several new potential susceptibility loci. Molecular Vision, 2014.
• Elena E Giorgi, Daniel O Stram, Darin Taverna, Stephen Turner, Fredrick Schumacher, Christopher a Haiman, Annette Lum-Jones, Maarit Tirikainen, …, Iona Cheng. Fine-mapping IGF1 and prostate cancer risk in African Americans: The Multiethnic Cohort Study.. Cancer Epidemiology, Biomarkers & Prevention, 2014. DOI URL
• Bruce Budowle, Nancy D Connell, Anna Bielecka-Oder, Rita R Colwell, Cindi R Corbett, Jacqueline Fletcher, Mats Forsman, Dana R Kadavy, …, Stephen D Turner, Samuel Minot. Validation of high throughput sequencing and microbial forensics applications. Investigative Genetics, 2014. DOI URL

2013

• Jessica Prince, Alyssa Lundgren, Michael D Stadnisky, William T Nash, Amira Beeber, Stephen D Turner, Michael G Brown. Multiparametric analysis of host response to murine cytomegalovirus in MHC class I-disparate mice reveals primacy of Dk-licensed Ly49G2+ NK cells in viral control.. Journal of Immunology, 2013. DOI URL

2012

• Mariano J Scian, Daniel G Maluf, Kellie J Archer, Stephen D Turner, Jihee L Suh, Krystle G David, Anne L King, Marc P Posner, Kenneth L Brayman, Valeria R Mas. Identification of Biomarkers to Assess Organ Quality and Predict Posttransplantation Outcomes.. Transplantation, 2012. DOI URL
• Unhee Lim, Stephen D. Turner, Adrian a. Franke, Robert V. Cooney, Lynne R. Wilkens, Thomas Ernst, Cheryl L. Albright, Rachel Novotny, …, Loïc Le Marchand. Predicting Total, Abdominal, Visceral and Hepatic Adiposity with Circulating Biomarkers in Caucasian and Japanese American Women. PLoS ONE, 2012. DOI URL

2011

• Rebecca L Zuvich, Loren L Armstrong, Suzette J Bielinski, Yuki Bradford, Christopher S Carlson, Dana C Crawford, Andrew T Crenshaw, Mariza de Andrade, …, Stephen D Turner, …, Marylyn D Ritchie. Pitfalls of merging GWAS data: lessons learned in the eMERGE network and quality control procedures to maintain high data quality.. Genetic epidemiology, 2011. DOI URL
• Stephen D. Turner, Richard L. Berg, James G. Linneman, Peggy L. Peissig, Dana C. Crawford, Joshua C. Denny, Dan M. Roden, Catherine a. McCarty, Marylyn D. Ritchie, Russell A. Wilke. Knowledge-Driven Multi-Locus Analysis Reveals Gene-Gene Interactions Influencing HDL Cholesterol Level in Two Independent EMR-Linked Biobanks. PLoS ONE, 2011. DOI URL
• Jovanny Zabaleta, Maria C Camargo, Marylyn D Ritchie, Maria B Piazuelo, Rosa A Sierra, Stephen D Turner, Alberto Delgado, Elizabeth T H Fontham, …, Augusto C Ochoa. Association of haplotypes of inflammation-related genes with gastric preneoplastic lesions in African Americans and Caucasians.. International journal of cancer. Journal international du cancer, 2011. DOI URL
• Stephen D Turner, Scott M Dudek, Marylyn D Ritchie. Incorporating Domain Knowledge into Evolutionary Computing for Discovering Gene-Gene Interaction. Lecture Notes in Computer Science, 2011. URL
• Stephen D Turner, William S Bush. Multivariate analysis of regulatory SNPs: empowering personal genomics by considering cis-epistasis and heterogeneity.. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 2011. URL
• Stephen Turner, Loren L. Armstrong, Yuki Bradford, Christopher S. Carlson, Dana C. Crawford, Andrew T. Crenshaw, Mariza de Andrade, Kimberly F. Doheny, …, Marylyn D. Ritchie. Quality Control Procedures for Genome Wide Association Studies. Current protocols in human genetics / editorial board, Jonathan L. Haines ... [et al.], 2011. DOI URL

2010

• Stephen D Turner, Scott M Dudek, Marylyn D Ritchie. Grammatical Evolution of Neural Networks for Discovering Epistasis among Quantitative Trait Loci. Lecture Notes in Computer Science, 2010. URL
• Todd L Edwards, Stephen D Turner, Eric S Torstenson, Scott M Dudek, Eden R Martin, Marylyn D Ritchie. A General Framework for Formal Tests of Interaction after Exhaustive Search Methods with Applications to MDR and MDR-PDT. PLoS ONE, 2010. URL
• Emily R Holzinger, Carrie C Buchanan, Scott M Dudek, Eric C Torstenson, Stephen D Turner, Marylyn D Ritchie. Initialization Parameter Sweep in ATHENA: Optimizing Neural Networks for Detecting Gene-Gene Interactions in the Presence of Small Main Effects.. Genetic and Evolutionary Computation Conference : [proceedings] / sponsored by ACM SIGEVO. Genetic and Evolutionary Computation Conference, 2010. DOI URL
• Stephen D Turner, Scott Dudek, Marylyn Ritchie. ATHENA: A knowledge-based hybrid backpropagation-grammatical evolution neural network algorithm for discovering epistasis among quantitative trait Loci. BioData Mining, 2010. URL

2009

• Stephen D Turner, Dana C Crawford, Marylyn D Ritchie. Methods for optimizing statistical analyses in pharmacogenomics research. Expert Review of Clinical Pharmacology, 2009. URL
• Stephen D Turner, Marylyn D Ritchie, William S Bush. Conquering the Needle-in-a-Haystack: How Correlated Input Variables Beneficially Alter the Fitness Landscape for Neural Networks. Lecture Notes in Computer Science, 2009. URL

2008

• Todd L Edwards, William S Bush, Stephen D Turner, Scott M Dudek, Eric S Torstenson, Mike Schmidt, Eden Martin, Marylyn D Ritchie. Generating Linkage Disequilibrium Patterns in Data Simulations using genomeSIMLA. Lecture Notes in Computer Science, 2008. URL